Neuroscience Cyberinfrastructure Research Environment

powered by Cybershuttle!

Cybershuttle will provide a unified framework that allows for better discovery of experimental data to build models, simulate models across different computational resources, and fine-tune parameters.

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Features

Cybershuttle will allow design model, execution and analyze results anywhere and share.

Cybershuttle Framework will allow building applications to compute on a range of compute resources using available models using various simulation codes.

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Design Model

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Run Model

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Visualize/ Analyze Results

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Model Optimization

Cellular and Neurochemical Basis of Sleep Stages in the Thalamocortical Network

This project reproduces the results of Cellular and neurochemical basis of sleep stages in the thalamocortical network. The study investigated how acetylcholine, histamine, GABA, and monoamines interact with shifting the brain between waking, non-rapid eye movement (NREM) sleep and rapid eye movement (REM) sleep within an ultradian cycle.

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ModelDB

ModelDB provides an accessible location for storing and efficiently retrieving computational neuroscience models. A ModelDB entry contains a model's source code, concise description, and a citation of the article that published it. The source code can be in any language for any environment, can be viewed before downloading, and optionally can be auto-launched on download. For further information, see model sharing in general and ModelDB in particular.

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Models of the Mouse Primary Visual Cortex

The Allen Institute for Brain Science developed data-driven models of the mouse primary visual cortex (area V1) for in silico visual physiology studies with arbitrary visual stimuli. The models integrate information from extensive literature review and data from high throughput experimental pipelines. Models were constructed at two levels of granularity, using either biophysically-detailed or Generalized Leaky Integrate and Fire (GLIF) point-neuron models.

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News and Events

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Partner Institutions

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Meet Our Team

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John Doe

Engineer

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John Doe

Engineer

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John Doe

Engineer

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John Doe

Engineer